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Custom Protein Production

Protein Expression & Purification Services

Start your experiments off right with high-purity, stable proteins reliably expressed and purified in RayBiotech’s ISO 13485-certified facility.

Our comprehensive custom protein production services span multiple expression systems—including bacterial, baculovirus/insect, and mammalian platforms—covering every step from gene synthesis and cloning to expression and purification. We troubleshoot difficult-to-express targets and offer flexible downstream options such as chemical conjugation in vitro (e.g., biotinylation), custom intracellular biotinylation using Avi-tag technology, lyophilization, and vialing to fit your application.

Our expert support team works closely with you to develop a tailored strategy that prioritizes yield, purity, structural integrity, and efficient turnaround.

Importantly, RayBiotech also operates GMP protein manufacturing programs for clinical and commercial applications. Our scientists bring experience in industry-grade analytical characterization, lot-to-lot consistency testing, and scalable purification, providing a strong technical foundation for projects that may advance toward translational or regulated applications.

Request a Quote GMP Protein Production

Quick Links:

Why Choose Us?  |  Expression System Options  |  TruExp™ Mammalian Expression  |  How It Works  |  FAQS   |  Resources

Why You Should Choose Our Custom Protein Production Service

RayBiotech combines flexible expression platforms, integrated array capabilities, and a milestone-based workflow to deliver high-quality proteins tailored to your application.

  • End-to-End Support – From gene synthesis through purification and downstream processing.
  • Assay Development & Array Printing – Incorporate your proteins into high-throughput arrays or immunoassays.
  • Defined Timelines – Typical delivery ranges from 3–8 weeks, depending on expression system.
  • Scalable Production – Seamless transition from small-scale validation to larger batch production.
  • Milestone-Based Project Structure – Minimizes risk through phased project execution.
  • High Purity Standards – Proteins typically achieve >95% purity; endotoxin removal and other contaminant testing available upon request.

See What Our Custom Protein Services Can Do For Your Research

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We Offer a Range of Protein Expression Systems to Support Different Research Needs

CategoryBacterial (E. coli)Insect Cells (Baculovirus)Mammalian (TruExp™)
Best For
Fast, cost-effective production of simple recombinant proteins.
Scalable production of complex proteins requiring eukaryotic folding and moderate PTMs.
Production of proteins requiring native conformation and human-like post-translational modifications.
Cell Type
E. coli
Sf9, High Five
HEK293 suspension cells (TruExp™ system)
Expression Level
Low–Medium–High
Low–High
Low–Medium–High
Typical Timeline
~3 weeks
6–8 weeks
3–6 weeks
Relative Cost
$
$$–$$$
$$–$$$
Scalability
Easily scalable after pilot expression.
Scalable from research to larger batch production.
Scalable from transient expression to larger production batches.
Protein Folding
Limited reliability
Reliable
Reliable
Glycosylation
None
Simple
Complex (human-like)
Phosphorylation
No
Yes
Yes
Acetylation
No
Yes
Yes
Acylation
No
Yes
Yes
γ-carboxylation
No
No
Yes
Common Applications
Bacterial proteins • Enzymes • Cytokines
Transmembrane proteins • Viral proteins • Kinases
Secreted proteins • Receptors • Antibodies & antibody fragments
Core Advantage
Fastest and most economical option for straightforward protein production.
Balanced system for challenging proteins requiring folding and PTMs.
Best option for biologically active proteins requiring native structure and human-like modifications.

How Our Custom Protein Production Service Works

Workflow steps for producing a custom protein with purification.

Phase 1: Gene synthesis (usually 2-4 weeks)
The target gene is synthesized, using a sequence that is codon optimized for the expression system.

Phase 2: Gene cloning (1 week)
The target gene is cloned into RayBiotech OVER-expression vectors with an N-terminal signal peptide for protein secretion and an N-terminal or C-terminal 6x Histidine (His) tag for protein affinity purification. The recombinant construct is confirmed by DNA sequencing.

Phase 3: Small-scale gene expression (1-2 weeks)
The plasmid cDNA is extracted from the cells used for cloning and transfected into 5 mL of the expression cells. We examine the target protein in the cell lysate and supernatant via SDS-PAGE and/or western blotting using an anti-His tag antibody to evaluate gene expression levels, protein expression levels, protein secretion, and protein solubility. If the protein does not meet your expectation, the service can be stopped after this phase.

Deliverable: SDS-PAGE and/or western blotting results.

Phase 4: Large-scale gene expression and purification (2-4 weeks)
The plasmid cDNA is extracted from the cells used for cloning and transfected into 2 liters of the expression cells (3 million cells per ml). The cells are cultured and the target protein is purified via its His tag using immobilized metal ion affinity chromatography (IMAC). The concentration and purity of the purified protein are determined using a bicinchoninic acid (BCA) assay and SDS-PAGE with Coomassie blue staining, respectively. The protein is desalted into 0.2 µm filtered 1x phosphate-buffered saline (PBS), pH 7.4. The protein can then be aliquoted, lyophilized, and labeled upon request (additional lead time may apply).

Deliverable: All the protein purified in this phase.

Phase 5: Bulk production (optional)
Large-scale gene expression and purification based on your desired amount of purified protein.

Deliverable: All the protein purified in this phase.

See the Power Of Our Proprietary TruExp™ Mammalian Cell Gene Expression System

Ready to see what our protein production service can do for your research?

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FAQ

Frequently Asked Questions

Still have questions?

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We guarantee that your target gene-of-interest is correctly synthesized using DNA sequencing.

We cannot guarantee that your protein will be expressed since expression level cannot be predicted. This is why a small-scale gene expression test to determine protein expression is performed in Phase 3. However, membrane proteins are often poorly expressed and purified. Therefore, we recommend that only soluble domains are expressed.

You only need to pay for the work that is performed. That is, if the results in Phase 3 show that the expression failed and you choose not to continue to Phase 4, you do not need to pay for Phase 4.

The signal peptide causes the protein target to be secreted out of the cell and into the serum-free culture media where the protein content is minimal. This results in a purer purified protein since there are fewer proteins in the culture supernatant (compared to the cell lysate) to nonspecifically bind to the affinity purification column. For example, protein purity > 95% is routinely achieved with secreted proteins, whereas protein purity > 50% is often obtained with non-secreted proteins.

Sometimes the protein target will not be secreted even with the signal peptide. It is likely that, in the protein tertiary structure, the signal peptide is occluded.

The signal peptide is 25 amino acids long. It is often cleaved by proteases in cell culture, but we cannot guarantee that the signal peptide will be cleaved. Upon request, we can exclude the signal peptide in the expressed protein.

Yes. If you have already expressed your target protein successfully using your expression vector, please provide the expression conditions that you would like us to use. We can then go to Phase 4 directly. If you have not confirmed that the gene is expressed in your expression vector, we will perform a small-scale expression test in Phase 3.

It depends. Please provide us with the gene sequence and, at a minimum, 100 nucleotides flanking the gene at the 5' and 3' ends. This information is necessary because we will use restriction enzymes to cut the gene out of your plasmid and ligate it into ours (i.e., cloning). If we can clone your gene into our vector, then Phase 1 is not necessary. If the gene and flanking sequences are incompatible with any restriction digest approach, then we cannot use your gene and will have to start at Phase 1.

Also, it is important to consider whether your gene is codon optimized for the expression system.

Yes. Please indicate this in the quote request form.

We can add a cleavage site between the tag and target protein.

For example, we can add a tobacco etch virus (TEV) site between the His tag and protein-of-interest. After the His-tagged protein is purified, a His-tagged protease could be added, cleaving the His tag from the target protein. The tagless protein could then be purified from the His tag and His-tagged TEV protease using IMAC.

If the protein was expressed and purified previously, you do not need to pay for Phases 1 - 4 again. You would simply complete the quote request form for the desired amount of purified protein (Phase 5). Please make sure to include the previous sales order or invoice number in the Project Description section.

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Related Services

GMP Protein Production

GMP-certified proteins are meticulously manufactured under precise guidelines to guarantee product quality and consistency for safe and effective use in these applications.

CRO Services

When you need a few extra hands to get an assay completed or support from experimental design to data analysis, our experienced team of scientists is ready to help.

Antibody Services

Leverage the same quality antibody production processes we put into our products for your custom research and bulk antibody production needs.

Related Products

Proteins and Peptides

Whether you need a purified recombinant protein or peptide, overexpressed protein in cell extract or supernatant, a natively produced protein, or related reagents like protease inhibitors, you’ll find a quality product for confident discovery.

Antibodies

Choose from a wide range of pre-conjugated and unlabeled antibodies raised in a wide variety of species—all manufactured to the exacting standards you’ve come to expect from RayBiotech.

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